# psma documentation

`psma` is an open source Python implementation of the probabilistic
surface of molecular activity workflow described in the paper
[*A visual approach for analysis and inference of molecular activity spaces*](https://link.springer.com/article/10.1186/s13321-019-0386-z).

This documentation is organised using the Diataxis framework:

- Tutorials teach the workflow step by step.
- How-to guides solve concrete user tasks.
- Explanations describe the model and design choices.
- Reference documents the API, CLI, and file formats.

```{toctree}
:maxdepth: 2
:caption: Tutorials

tutorials/index
```

```{toctree}
:maxdepth: 2
:caption: How-To Guides

how-to/index
```

```{toctree}
:maxdepth: 2
:caption: Explanation

explanation/index
```

```{toctree}
:maxdepth: 2
:caption: Reference

reference/index
```